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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9034-RA through 18771 annotations produced 1 hits


Annotation Number : CG9034
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040931
Gbrowse : chrX:9053544-9054018 (-) // 99.05 //
Probeset : 1625847_at
Accessions : protein= NP_652538;, nucleotide= NM_144281;
FlyMine data for FBgn0040931.
VDRC has 3 RNAi stocks for FBgn0040931 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain649 94 of 4 1.30None
Head725 374 of 4 1.50Up
Eye976 344 of 4 1.97Up
Thoracicoabdominal ganglion716 384 of 4 1.40Up
Salivary gland974 94 of 4 1.96Up
Crop481 234 of 4 1.00None
Midgut697 304 of 4 1.40Up
Tubule409 154 of 4 0.80Down
Hindgut913 134 of 4 1.80Up
Heart775 284 of 4 1.56Up
Fat body921 1094 of 4 1.85Up
Ovary286 154 of 4 0.60Down
Testis274 74 of 4 0.60Down
Male accessory glands397 364 of 4 0.80None
Virgin spermatheca248 174 of 4 0.50Down
Mated spermatheca231 124 of 4 0.47Down
Adult carcass912 134 of 4 1.80Up
Larval CNS550 644 of 4 1.11None
Larval Salivary gland691 124 of 4 1.39Up
Larval midgut606 204 of 4 1.22None
Larval tubule405 394 of 4 0.80None
Larval hindgut687 294 of 4 1.38Up
Larval fat body209 74 of 4 0.40Down
Larval trachea433 424 of 4 0.87None
Larval carcass579 824 of 4 1.17None
S2 cells (growing)379 34 of 4 0.76None
Whole fly496 394 of 4

Looking for CG9034-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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