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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9044-RA through 18771 annotations produced 1 hits



(CG9044):

Annotation Number : CG9044
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031752
Gbrowse : chr2L:5949483-5955238 (+) // 100.0 //
Probeset : 1628438_at
Accessions : protein= NP_608971;, nucleotide= NM_135127;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0031752.
VDRC has 3 RNAi stocks for FBgn0031752 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain178 ± 54 of 4 1.60Up
Head154 ± 64 of 4 1.40Up
Eye124 ± 34 of 4 1.10None
Thoracicoabdominal ganglion155 ± 54 of 4 1.40Up
Salivary gland272 ± 54 of 4 2.39Up
Crop158 ± 44 of 4 1.40Up
Midgut111 ± 34 of 4 1.00None
Tubule96 ± 14 of 4 0.80Down
Hindgut155 ± 64 of 4 1.40Up
Heart172 ± 174 of 4 1.51Up
Fat body426 ± 524 of 4 3.75Up
Ovary126 ± 44 of 4 1.10None
Testis52 ± 34 of 4 0.50Down
Male accessory glands159 ± 34 of 4 1.40Up
Virgin spermatheca524 ± 554 of 4 4.61Up
Mated spermatheca471 ± 384 of 4 4.14Up
Adult carcass263 ± 144 of 4 2.30Up
Larval CNS82 ± 54 of 4 0.73Down
Larval Salivary gland148 ± 74 of 4 1.31Up
Larval midgut115 ± 134 of 4 1.01None
Larval tubule221 ± 114 of 4 1.90Up
Larval hindgut272 ± 254 of 4 2.39Up
Larval fat body176 ± 164 of 4 1.50Up
Larval trachea86 ± 34 of 4 0.76Down
Larval carcass148 ± 154 of 4 1.30None
S2 cells (growing)93 ± 64 of 4 0.82Down
Whole fly113 ± 44 of 4

Looking for CG9044-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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