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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9046-RA through 18771 annotations produced 1 hits



Vitelline membrane 26Ab (Vm26Ab):

Annotation Number : CG9046
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003980
Gbrowse : chr2L:5957003-5957628 (+) // 100.0 //
Probeset : 1641651_at
Accessions : protein= NP_476784;, nucleotide= NM_057436;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0060388 // vitelline envelope // inferred fro
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008316 // structural constituent of vitelline memb
FlyMine data for FBgn0003980.
BioGrid reports that CG9046 interacts with CG9797 CG9986 .
VDRC has 2 RNAi stocks for FBgn0003980 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 22 of 4 0.00Down
Head7 ± 11 of 4 0.00Down
Eye5 ± 10 of 4 0.00Down
Thoracicoabdominal ganglion11 ± 23 of 4 0.00Down
Salivary gland22 ± 81 of 4 0.01Down
Crop20 ± 82 of 4 0.00Down
Midgut6 ± 30 of 4 0.00Down
Tubule19 ± 130 of 4 0.00Down
Hindgut12 ± 11 of 4 0.00Down
Heart8 ± 03 of 4 0.00Down
Fat body35 ± 144 of 4 0.02Down
Ovary2542 ± 2164 of 4 1.10None
Testis7 ± 10 of 4 0.00Down
Male accessory glands12 ± 10 of 4 0.00Down
Virgin spermatheca24 ± 113 of 4 0.01Down
Mated spermatheca22 ± 82 of 4 0.01Down
Adult carcass253 ± 1654 of 4 0.10Down
Larval CNS9 ± 14 of 4 0.00Down
Larval Salivary gland11 ± 21 of 4 0.00Down
Larval midgut23 ± 30 of 4 0.01Down
Larval tubule7 ± 10 of 4 0.00Down
Larval hindgut12 ± 13 of 4 0.01Down
Larval fat body8 ± 20 of 4 0.00Down
Larval trachea6 ± 24 of 4 0.00Down
Larval carcass13 ± 03 of 4 0.01Down
S2 cells (growing)11 ± 14 of 4 0.00Down
Whole fly2287 ± 4244 of 4

Looking for CG9046-RA. 1 entries matched from 18771, in 3 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime