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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9057-RA through 18771 annotations produced 1 hits



Lipid storage droplet-2 (Lsd-2):

Annotation Number : CG9057
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030608
Gbrowse : chrX:14965488-14970236 (-) // 100.0 //
Probeset : 1637359_at
Accessions : protein= NP_001036276; /// NP_001036277; /// NP_572996;, nucleotide= NM_001042811; /// NM_001042812; /// NM_132768;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030608.
BDGP gene expression has embryonic in situ data for CG9057: 32 pix of staining in 9 body parts.
TRiP has 2 RNAi stocks for FBgn0030608 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030608 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain315 144 of 4 0.30Down
Head844 814 of 4 0.80None
Eye834 524 of 4 0.80Down
Thoracicoabdominal ganglion439 284 of 4 0.40Down
Salivary gland671 424 of 4 0.64Down
Crop1406 564 of 4 1.30Up
Midgut1335 484 of 4 1.30Up
Tubule1011 1144 of 4 1.00None
Hindgut1014 404 of 4 1.00None
Heart2112 734 of 4 2.02Up
Fat body3154 8784 of 4 3.01Up
Ovary1481 274 of 4 1.40Up
Testis49 44 of 4 0.00Down
Male accessory glands372 324 of 4 0.40Down
Virgin spermatheca1210 264 of 4 1.16None
Mated spermatheca1454 814 of 4 1.39Up
Adult carcass2086 1054 of 4 2.00Up
Larval CNS346 494 of 4 0.33Down
Larval Salivary gland980 474 of 4 0.94None
Larval midgut1181 884 of 4 1.13None
Larval tubule1167 684 of 4 1.10None
Larval hindgut374 304 of 4 0.36Down
Larval fat body1336 1724 of 4 1.30None
Larval trachea289 374 of 4 0.28Down
Larval carcass198 134 of 4 0.19Down
S2 cells (growing)3 11 of 4 0.00Down
Whole fly1046 614 of 4

Looking for CG9057-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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