FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9077-RA through 18771 annotations produced 1 hits

CG9077 (Cpr47Ec):

Annotation Number : CG9077
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033600
Gbrowse : chr2R:7146821-7147344 (-) // 100.0 //
Probeset : 1634648_at
Accessions : protein= NP_610657;, nucleotide= NM_136813;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0033600.
VDRC has 4 RNAi stocks for FBgn0033600 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	0 of 4	1.00	None
Head	7 ± 1	0 of 4	1.50	None
Eye	197 ± 88	4 of 4	39.87	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.60	None
Salivary gland	10 ± 4	0 of 4	2.20	None
Crop	7 ± 1	0 of 4	1.50	None
Midgut	2 ± 0	0 of 4	0.60	Down
Tubule	4 ± 0	0 of 4	0.80	Down
Hindgut	4 ± 1	0 of 4	1.00	None
Heart	6 ± 2	1 of 4	1.30	None
Fat body	2 ± 0	0 of 4	0.40	Down
Ovary	5 ± 1	0 of 4	1.10	None
Testis	6 ± 1	0 of 4	1.20	None
Male accessory glands	7 ± 2	0 of 4	1.50	None
Virgin spermatheca	3 ± 0	0 of 4	0.70	None
Mated spermatheca	5 ± 1	0 of 4	1.04	None
Adult carcass	4 ± 1	0 of 4	0.80	None
Larval CNS	4 ± 1	0 of 4	0.83	None
Larval Salivary gland	8 ± 3	0 of 4	1.77	None
Larval midgut	11 ± 4	0 of 4	2.34	None
Larval tubule	4 ± 1	0 of 4	0.90	None
Larval hindgut	129 ± 20	4 of 4	26.08	Up
Larval fat body	13 ± 2	0 of 4	2.70	Up
Larval trachea	6122 ± 663	4 of 4	1236.83	Up
Larval carcass	3219 ± 432	4 of 4	650.42	Up
S2 cells (growing)	3 ± 1	0 of 4	0.68	None
Whole fly	5 ± 0	0 of 4

Looking for CG9077-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720