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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9079-RA through 18771 annotations produced 1 hits



CG9079 (Cpr47Ea):

Annotation Number : CG9079
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033597
Gbrowse : chr2R:7139631-7140396 (-) // 100.0 //
Probeset : 1625400_at
Accessions : protein= NP_610654;, nucleotide= NM_136810;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0033597.
VDRC has 2 RNAi stocks for FBgn0033597 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.60None
Head6 ± 11 of 4 1.90None
Eye4 ± 10 of 4 1.27None
Thoracicoabdominal ganglion2 ± 00 of 4 0.70None
Salivary gland7 ± 30 of 4 1.97None
Crop2 ± 10 of 4 0.80None
Midgut3 ± 00 of 4 0.90None
Tubule1 ± 00 of 4 0.50Down
Hindgut0 ± 00 of 4 0.20None
Heart2 ± 00 of 4 0.80None
Fat body4 ± 20 of 4 1.16None
Ovary0 ± 00 of 4 0.20None
Testis2 ± 00 of 4 0.80None
Male accessory glands3 ± 10 of 4 0.90None
Virgin spermatheca3 ± 10 of 4 0.89None
Mated spermatheca5 ± 10 of 4 1.49None
Adult carcass13 ± 41 of 4 3.70None
Larval CNS1 ± 00 of 4 0.35None
Larval Salivary gland3 ± 10 of 4 0.89None
Larval midgut4 ± 10 of 4 1.33None
Larval tubule3 ± 10 of 4 0.80None
Larval hindgut3 ± 10 of 4 0.89None
Larval fat body1 ± 00 of 4 0.50None
Larval trachea6 ± 40 of 4 1.83None
Larval carcass7 ± 10 of 4 2.12None
S2 cells (growing)1 ± 00 of 4 0.45None
Whole fly3 ± 10 of 4

Looking for CG9079-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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