FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9080-RA through 18771 annotations produced 1 hits

Listericin (Listericin):

Annotation Number : CG9080
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033593
Gbrowse : chr2R:7129249-7129700 (-) // 98.9 //
Probeset : 1633812_at
Accessions : protein= NP_610650;, nucleotide= NM_136806;
FlyMine data for FBgn0033593.
BDGP gene expression has embryonic in situ data for CG9080: 16 pix of staining in 3 body parts.
VDRC has 2 RNAi stocks for FBgn0033593 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	9 ± 1	1 of 4	0.00	Down
Head	1703 ± 101	4 of 4	5.50	Up
Eye	68 ± 6	4 of 4	0.22	Down
Thoracicoabdominal ganglion	9 ± 2	1 of 4	0.00	Down
Salivary gland	15 ± 6	2 of 4	0.05	Down
Crop	256 ± 34	4 of 4	0.80	None
Midgut	4 ± 1	0 of 4	0.00	Down
Tubule	4 ± 2	0 of 4	0.00	Down
Hindgut	236 ± 18	4 of 4	0.80	None
Heart	9 ± 1	3 of 4	0.03	Down
Fat body	38 ± 20	3 of 4	0.12	Down
Ovary	8 ± 2	0 of 4	0.00	Down
Testis	3 ± 1	0 of 4	0.00	Down
Male accessory glands	11 ± 2	1 of 4	0.00	Down
Virgin spermatheca	28 ± 3	4 of 4	0.09	Down
Mated spermatheca	386 ± 83	4 of 4	1.26	None
Adult carcass	665 ± 38	4 of 4	2.20	Up
Larval CNS	3 ± 2	0 of 4	0.01	Down
Larval Salivary gland	12 ± 2	1 of 4	0.04	Down
Larval midgut	13 ± 1	2 of 4	0.04	Down
Larval tubule	4 ± 0	0 of 4	0.00	Down
Larval hindgut	173 ± 34	4 of 4	0.56	None
Larval fat body	6 ± 1	0 of 4	0.00	Down
Larval trachea	156 ± 88	4 of 4	0.51	None
Larval carcass	1418 ± 193	4 of 4	4.61	Up
S2 cells (growing)	3 ± 1	0 of 4	0.01	Down
Whole fly	308 ± 49	4 of 4

Looking for CG9080-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720