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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9084-RA through 18771 annotations produced 1 hits



(CG9084):

Annotation Number : CG9084
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033582
Gbrowse : chr2R:7105036-7106718 (-) // 100.0 //
Probeset : 1636175_a_at
Accessions : protein= NP_610640;, nucleotide= NM_136796;
FlyMine data for FBgn0033582.
BDGP gene expression has embryonic in situ data for CG9084: 10 pix of staining in 3 body parts.
VDRC has 6 RNAi stocks for FBgn0033582 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 03 of 4 0.10Down
Head6 ± 22 of 4 0.10Down
Eye6 ± 01 of 4 0.10Down
Thoracicoabdominal ganglion8 ± 01 of 4 0.10Down
Salivary gland12 ± 20 of 4 0.21Down
Crop7 ± 11 of 4 0.10Down
Midgut711 ± 324 of 411.50Up
Tubule18 ± 22 of 4 0.30Down
Hindgut181 ± 84 of 4 2.90Up
Heart2 ± 00 of 4 0.05Down
Fat body9 ± 13 of 4 0.15Down
Ovary2 ± 00 of 4 0.00Down
Testis5 ± 10 of 4 0.10Down
Male accessory glands5 ± 20 of 4 0.10Down
Virgin spermatheca16 ± 03 of 4 0.26Down
Mated spermatheca12 ± 33 of 4 0.20Down
Adult carcass6 ± 20 of 4 0.10Down
Larval CNS4 ± 10 of 4 0.07Down
Larval Salivary gland5 ± 10 of 4 0.08Down
Larval midgut783 ± 344 of 412.70Up
Larval tubule84 ± 34 of 4 1.40Up
Larval hindgut119 ± 84 of 4 1.94Up
Larval fat body5 ± 20 of 4 0.10Down
Larval trachea4 ± 32 of 4 0.07Down
Larval carcass5 ± 10 of 4 0.09Down
S2 cells (growing)2 ± 00 of 4 0.04Down
Whole fly61 ± 54 of 4

Looking for CG9084-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime