FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9086-RA through 18771 annotations produced 1 hits

(CG9086):

Annotation Number : CG9086
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030809
Gbrowse : chrX:16850979-16862682 (-) // 100.0 //
Probeset : 1635376_at
Accessions : protein= NP_573184;, nucleotide= NM_132956;
Pathway : 0000151 // ubiquitin ligase complex // inferred from sequence or structural similarity
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0030809.
Homophila reports that CG9086 is a close match (7e-175) to human gene JBS;UBR1 (NP_777576), a gene associated with Johanson-Blizzard syndrome, 243800 (3).
BioGrid reports that CG9086 interacts with CG9163 .
TRiP has 1 RNAi stocks for FBgn0030809 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030809 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	96 ± 0	4 of 4	1.70	None
Head	47 ± 9	4 of 4	0.90	None
Eye	12 ± 1	1 of 4	0.23	Down
Thoracicoabdominal ganglion	57 ± 4	4 of 4	1.00	None
Salivary gland	51 ± 1	4 of 4	0.93	None
Crop	47 ± 0	4 of 4	0.80	None
Midgut	43 ± 2	4 of 4	0.80	None
Tubule	23 ± 1	3 of 4	0.40	Down
Hindgut	58 ± 1	4 of 4	1.10	None
Heart	24 ± 3	4 of 4	0.44	Down
Fat body	60 ± 5	4 of 4	1.10	None
Ovary	130 ± 5	4 of 4	2.40	Up
Testis	41 ± 4	4 of 4	0.70	None
Male accessory glands	48 ± 0	4 of 4	0.90	None
Virgin spermatheca	22 ± 2	3 of 4	0.41	Down
Mated spermatheca	17 ± 1	1 of 4	0.32	Down
Adult carcass	71 ± 16	4 of 4	1.30	None
Larval CNS	47 ± 9	4 of 4	0.86	None
Larval Salivary gland	43 ± 3	4 of 4	0.79	None
Larval midgut	56 ± 4	4 of 4	1.03	None
Larval tubule	59 ± 3	4 of 4	1.10	None
Larval hindgut	53 ± 0	4 of 4	0.97	None
Larval fat body	52 ± 2	4 of 4	0.90	None
Larval trachea	15 ± 4	2 of 4	0.28	Down
Larval carcass	65 ± 11	4 of 4	1.18	None
S2 cells (growing)	131 ± 3	4 of 4	2.36	Up
Whole fly	55 ± 6	4 of 4

Looking for CG9086-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720