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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9090-RA through 18771 annotations produced 1 hits



(CG9090):

Annotation Number : CG9090
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034497
Gbrowse : chr2R:16166560-16168629 (-) // 100.0 //
Probeset : 1633272_at
Accessions : protein= NP_611468;, nucleotide= NM_137624;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0016020 // membrane // inferred
Interpro : 0005488 // binding // inferred from electronic annotation /// 0015114 // phosphate transmembrane transporter activity //
FlyMine data for FBgn0034497.
BDGP gene expression has embryonic in situ data for CG9090: 6 pix of staining in 1 body parts.
Homophila reports that CG9090 is a close match (1e-15) to human gene DNC;MCPHA;MUP1;SLC25A19 (NP_068380), a gene associated with Microcephaly, Amish type, 607196 (3).
TRiP has 1 RNAi stocks for FBgn0034497 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034497 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 20 of 4 0.00Down
Head514 794 of 4 0.70Down
Eye62 102 of 4 0.08Down
Thoracicoabdominal ganglion117 254 of 4 0.10Down
Salivary gland47 110 of 4 0.06Down
Crop571 254 of 4 0.70Down
Midgut38 50 of 4 0.00Down
Tubule60 91 of 4 0.10Down
Hindgut363 84 of 4 0.50Down
Heart969 994 of 4 1.24None
Fat body104 110 of 4 0.13Down
Ovary11 30 of 4 0.00Down
Testis19 00 of 4 0.00Down
Male accessory glands65 40 of 4 0.10Down
Virgin spermatheca58 13 of 4 0.08Down
Mated spermatheca85 24 of 4 0.11Down
Adult carcass3075 1774 of 4 3.90Up
Larval CNS19 10 of 4 0.03Down
Larval Salivary gland25 60 of 4 0.03Down
Larval midgut64 40 of 4 0.08Down
Larval tubule15 20 of 4 0.00Down
Larval hindgut373 64 of 4 0.48Down
Larval fat body8 20 of 4 0.00Down
Larval trachea53 280 of 4 0.07Down
Larval carcass1212 1684 of 4 1.55None
S2 cells (growing)10 20 of 4 0.01Down
Whole fly779 544 of 4

Looking for CG9090-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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