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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9092-RA through 18771 annotations produced 1 hits



beta-galactosidase-1 (Gal):

Annotation Number : CG9092
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001089
Gbrowse : chr2L:6003573-6006791 (-) // 100.0 //
Probeset : 1633914_at
Accessions : protein= NP_608978;, nucleotide= NM_135134;
Pathway : 0005764 // lysosome // inferred from sequence or structural similarity
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0001089.
Homophila reports that CG9092 is a close match (4e-121) to human gene GLB1 (NP_001073279), a gene associated with GM1-gangliosidosis, type I, 230500 (3);GM1-gangliosidosis, type II, 230600 (3);GM1-gangliosidosis, type III, 230650 (3);Morquio syndrome B, 253010 (3).
VDRC has 2 RNAi stocks for FBgn0001089 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain126 54 of 4 1.00None
Head92 44 of 4 0.70Down
Eye33 44 of 4 0.26Down
Thoracicoabdominal ganglion148 104 of 4 1.20None
Salivary gland40 50 of 4 0.31Down
Crop21 12 of 4 0.20Down
Midgut1594 844 of 412.40Up
Tubule9 00 of 4 0.10Down
Hindgut35 04 of 4 0.30Down
Heart60 74 of 4 0.47Down
Fat body12 22 of 4 0.10Down
Ovary2 00 of 4 0.00Down
Testis81 34 of 4 0.60Down
Male accessory glands12 40 of 4 0.10Down
Virgin spermatheca338 124 of 4 2.64Up
Mated spermatheca322 314 of 4 2.52Up
Adult carcass62 34 of 4 0.50Down
Larval CNS26 54 of 4 0.20Down
Larval Salivary gland6 20 of 4 0.05Down
Larval midgut112 154 of 4 0.88None
Larval tubule16 22 of 4 0.10Down
Larval hindgut28 44 of 4 0.22Down
Larval fat body42 14 of 4 0.30Down
Larval trachea279 234 of 4 2.18Up
Larval carcass739 1024 of 4 5.77Up
S2 cells (growing)6 01 of 4 0.05Down
Whole fly128 74 of 4

Looking for CG9092-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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