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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9109-RA through 18771 annotations produced 1 hits



(CG9109):

Annotation Number : CG9109
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031765
Gbrowse : chr2L:6025869-6034423 (-) // 99.61 //
Probeset : 1634686_at
Accessions : protein= NP_001033879; /// NP_608982;, nucleotide= NM_001038790; /// NM_135138;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity
FlyMine data for FBgn0031765.
Homophila reports that CG9109 is a close match (4e-20) to human gene (NP_919299), a gene associated with .
VDRC has 3 RNAi stocks for FBgn0031765 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 ± 14 of 418.00Up
Head24 ± 01 of 4 5.00Up
Eye2 ± 00 of 4 0.44None
Thoracicoabdominal ganglion66 ± 24 of 413.50Up
Salivary gland3 ± 00 of 4 0.66None
Crop4 ± 20 of 4 0.90None
Midgut4 ± 10 of 4 0.90None
Tubule6 ± 10 of 4 1.20None
Hindgut1 ± 00 of 4 0.30None
Heart1 ± 00 of 4 0.30None
Fat body6 ± 50 of 4 1.37None
Ovary1 ± 00 of 4 0.30None
Testis7 ± 10 of 4 1.40None
Male accessory glands1 ± 00 of 4 0.30None
Virgin spermatheca1 ± 00 of 4 0.29None
Mated spermatheca1 ± 00 of 4 0.34None
Adult carcass4 ± 00 of 4 0.90None
Larval CNS48 ± 84 of 4 9.92Up
Larval Salivary gland8 ± 10 of 4 1.69None
Larval midgut4 ± 20 of 4 0.82None
Larval tubule4 ± 20 of 4 1.00None
Larval hindgut1 ± 00 of 4 0.39None
Larval fat body3 ± 00 of 4 0.60None
Larval trachea2 ± 20 of 4 0.57None
Larval carcass1 ± 00 of 4 0.39None
S2 cells (growing)1 ± 00 of 4 0.28None
Whole fly4 ± 20 of 4

Looking for CG9109-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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