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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9113-RB through 18771 annotations produced 1 hits



AP-1gamma (AP-1gamma):

Annotation Number : CG9113
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030089
Gbrowse : chrX:9002725-9010549 (+) // 100.0 //
Probeset : 1634294_s_at
Accessions : protein= NP_001096918; /// NP_572527; /// NP_727311; /// NP_788890; /// NP_788891; /// NP_996394;, nucleotide= NM_001103448; /// NM_132299; /// NM_167178; /// NM_176717; /// NM_176718; /// NM_206671;
Pathway : 0005794 // Golgi apparatus // inferred from electronic annotation /// 0008021 // synaptic vesicle // traceable author st
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic ann
FlyMine data for FBgn0030089.
TRiP has 1 RNAi stocks for FBgn0030089 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030089 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain172 64 of 4 1.80None
Head47 104 of 4 0.50None
Eye42 24 of 4 0.45None
Thoracicoabdominal ganglion122 144 of 4 1.30None
Salivary gland86 104 of 4 0.91None
Crop64 44 of 4 0.70None
Midgut129 94 of 4 1.40None
Tubule128 94 of 4 1.40Up
Hindgut118 54 of 4 1.20None
Heart37 34 of 4 0.39Down
Fat body45 104 of 4 0.48None
Ovary135 74 of 4 1.40None
Testis28 14 of 4 0.30Down
Male accessory glands65 44 of 4 0.70None
Virgin spermatheca16 23 of 4 0.17Down
Mated spermatheca16 13 of 4 0.17Down
Adult carcass51 114 of 4 0.50None
Larval CNS66 54 of 4 0.71None
Larval Salivary gland193 164 of 4 2.04Up
Larval midgut124 164 of 4 1.32None
Larval tubule97 54 of 4 1.00None
Larval hindgut80 84 of 4 0.85None
Larval fat body27 14 of 4 0.30Down
Larval trachea50 64 of 4 0.53None
Larval carcass50 64 of 4 0.54None
S2 cells (growing)108 24 of 4 1.14None
Whole fly94 174 of 4

Looking for CG9113-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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