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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9116-RA through 18771 annotations produced 1 hits



lysozyme (LysP):

Annotation Number : CG9116
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004429
Gbrowse : chr3L:1218009-1218696 (-) // 100.0 //
Probeset : 1636767_at
Accessions : protein= NP_476828;, nucleotide= NM_057480;
Interpro : "0003796 // lysozyme activity // inferred from electronic annotation /// 0003796 // lysozyme activity // inferred from s
FlyMine data for FBgn0004429.
Homophila reports that CG9116 is a close match (1e-21) to human gene LYZ (NP_000230), a gene associated with Amyloidosis, renal, 105200 (3).
VDRC has 4 RNAi stocks for FBgn0004429 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head53 164 of 4 0.30Down
Eye1 00 of 4 0.01Down
Thoracicoabdominal ganglion246 1423 of 4 1.40None
Salivary gland22860 13914 of 4126.63Up
Crop82 234 of 4 0.50None
Midgut9 20 of 4 0.10Down
Tubule5 30 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart1 00 of 4 0.01Down
Fat body17 281 of 4 0.10Down
Ovary0 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands5 10 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.00Down
Mated spermatheca0 00 of 4 0.00Down
Adult carcass291 584 of 4 1.60None
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland319 484 of 4 1.77None
Larval midgut26 50 of 4 0.15Down
Larval tubule1 10 of 4 0.00Down
Larval hindgut1 00 of 4 0.01Down
Larval fat body2 10 of 4 0.00Down
Larval trachea1 10 of 4 0.01Down
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly180 324 of 4

Looking for CG9116-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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