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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9120-RA through 18771 annotations produced 1 hits


Lysozyme X (LysX):

Annotation Number : CG9120
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004431
Gbrowse : chr3L:1194737-1195302 (-) // 100.0 //
Probeset : 1632720_at
Accessions : protein= NP_523881;, nucleotide= NM_079157;
Interpro : "0003796 // lysozyme activity // inferred from sequence or structural similarity /// 0003796 // lysozyme activity // non
FlyMine data for FBgn0004431.
Homophila reports that CG9120 is a close match (5e-19) to human gene LYZ (NP_000230), a gene associated with Amyloidosis, renal, 105200 (3).
VDRC has 2 RNAi stocks for FBgn0004431 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye2 ± 11 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland21 ± 31 of 4 0.06Down
Crop1 ± 00 of 4 0.00Down
Midgut3367 ± 524 of 410.00Up
Tubule17 ± 60 of 4 0.10Down
Hindgut747 ± 554 of 4 2.20Up
Heart3 ± 10 of 4 0.01Down
Fat body2 ± 20 of 4 0.01Down
Ovary0 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands7 ± 10 of 4 0.00Down
Virgin spermatheca7 ± 60 of 4 0.02Down
Mated spermatheca5 ± 10 of 4 0.02Down
Adult carcass5 ± 00 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland4 ± 10 of 4 0.01Down
Larval midgut5115 ± 1384 of 415.17Up
Larval tubule898 ± 2144 of 4 2.70None
Larval hindgut1076 ± 2494 of 4 3.19None
Larval fat body32 ± 102 of 4 0.10Down
Larval trachea2 ± 30 of 4 0.01Down
Larval carcass5 ± 20 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly337 ± 704 of 4

Looking for CG9120-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime