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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9127-RA through 18771 annotations produced 1 hits



adenosine2 (ade2):

Annotation Number : CG9127
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000052
Gbrowse : chr2L:6041177-6045970 (-) // 100.0 //
Probeset : 1629194_s_at
Accessions : protein= NP_477212; /// NP_723146; /// NP_723147;, nucleotide= NM_057864; /// NM_164675; /// NM_164676;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0000052.
BDGP gene expression has embryonic in situ data for ade2: 24 pix of staining in 13 body parts.
BioGrid reports that CG9127 interacts with CG9961 .
TRiP has 1 RNAi stocks for FBgn0000052 available for purchase.
VDRC has 1 RNAi stocks for FBgn0000052 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 ± 14 of 4 0.20Down
Head312 ± 174 of 4 1.60Up
Eye273 ± 134 of 4 1.43Up
Thoracicoabdominal ganglion61 ± 14 of 4 0.30Down
Salivary gland133 ± 94 of 4 0.70Down
Crop55 ± 34 of 4 0.30Down
Midgut46 ± 54 of 4 0.20Down
Tubule92 ± 44 of 4 0.50Down
Hindgut48 ± 44 of 4 0.30Down
Heart250 ± 134 of 4 1.31Up
Fat body520 ± 784 of 4 2.73Up
Ovary252 ± 44 of 4 1.30Up
Testis57 ± 24 of 4 0.30Down
Male accessory glands134 ± 114 of 4 0.70Down
Virgin spermatheca840 ± 604 of 4 4.40Up
Mated spermatheca527 ± 524 of 4 2.76Up
Adult carcass335 ± 14 of 4 1.80Up
Larval CNS150 ± 94 of 4 0.79Down
Larval Salivary gland123 ± 134 of 4 0.65Down
Larval midgut87 ± 34 of 4 0.46Down
Larval tubule89 ± 74 of 4 0.50Down
Larval hindgut68 ± 84 of 4 0.36Down
Larval fat body1552 ± 1034 of 4 8.10Up
Larval trachea142 ± 144 of 4 0.75Down
Larval carcass79 ± 34 of 4 0.41Down
S2 cells (growing)240 ± 94 of 4 1.26Up
Whole fly190 ± 54 of 4

Looking for CG9127-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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