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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9128-RA through 18771 annotations produced 1 hits



Sac1 (Sac1):

Annotation Number : CG9128
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035195
Gbrowse : chr3L:1248018-1250456 (+) // 100.0 //
Probeset : 1640190_at
Accessions : protein= NP_612087;, nucleotide= NM_138243;
Pathway : amnioserosa morphology change // inferred from mutant phenotype"
Interpro : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
FlyMine data for FBgn0035195.
BDGP gene expression has embryonic in situ data for CG9128: 18 pix of staining in 11 body parts.
Homophila reports that CG9128 is a close match (3e-44) to human gene FIG4;KIAA0274;SAC3 (NP_055660), a gene associated with Charcot-Marie-Tooth disease, type 4J, 611228 (3).
VDRC has 3 RNAi stocks for FBgn0035195 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain289 ± 54 of 4 1.40Up
Head249 ± 84 of 4 1.20Up
Eye536 ± 424 of 4 2.60Up
Thoracicoabdominal ganglion378 ± 144 of 4 1.80Up
Salivary gland565 ± 244 of 4 2.75Up
Crop290 ± 64 of 4 1.40Up
Midgut251 ± 54 of 4 1.20Up
Tubule401 ± 224 of 4 1.90Up
Hindgut324 ± 114 of 4 1.60Up
Heart190 ± 124 of 4 0.93None
Fat body271 ± 164 of 4 1.32Up
Ovary261 ± 34 of 4 1.30Up
Testis464 ± 104 of 4 2.30Up
Male accessory glands347 ± 214 of 4 1.70Up
Virgin spermatheca378 ± 264 of 4 1.84Up
Mated spermatheca469 ± 194 of 4 2.28Up
Adult carcass224 ± 74 of 4 1.10None
Larval CNS258 ± 84 of 4 1.26Up
Larval Salivary gland670 ± 144 of 4 3.26Up
Larval midgut356 ± 124 of 4 1.73Up
Larval tubule365 ± 124 of 4 1.80Up
Larval hindgut468 ± 164 of 4 2.28Up
Larval fat body242 ± 104 of 4 1.20Up
Larval trachea496 ± 184 of 4 2.41Up
Larval carcass270 ± 84 of 4 1.32Up
S2 cells (growing)470 ± 144 of 4 2.29Up
Whole fly205 ± 94 of 4

Looking for CG9128-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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