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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9131-RA through 18771 annotations produced 1 hits



/// Kisir (CG34179 /// slmo):

Annotation Number : CG9131
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029161 /// FBgn0085208
Gbrowse : chr2L:6046653-6047941 (-) // 100.0 //
Probeset : 1637285_s_at
Accessions : protein= NP_001097094; /// NP_001097095; /// NP_001137793; /// NP_001137794; /// NP_524705; /// NP_723148;, nucleotide= NM_001103624; /// NM_001103625; /// NM_001144321; /// NM_001144322; /// NM_079966; /// NM_164677;
Pathway : 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from mutant phenotype //
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029161 /// FBgn0085208.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain543 ± 134 of 4 0.80None
Head478 ± 174 of 4 0.70Down
Eye582 ± 84 of 4 0.90None
Thoracicoabdominal ganglion693 ± 144 of 4 1.10None
Salivary gland969 ± 444 of 4 1.50Up
Crop775 ± 224 of 4 1.20Up
Midgut397 ± 204 of 4 0.60Down
Tubule684 ± 34 of 4 1.10Up
Hindgut686 ± 174 of 4 1.10None
Heart1010 ± 274 of 4 1.57Up
Fat body1009 ± 394 of 4 1.56Up
Ovary584 ± 144 of 4 0.90None
Testis1260 ± 834 of 4 2.00Up
Male accessory glands618 ± 164 of 4 1.00None
Virgin spermatheca574 ± 284 of 4 0.89None
Mated spermatheca595 ± 234 of 4 0.92None
Adult carcass1624 ± 574 of 4 2.50Up
Larval CNS345 ± 104 of 4 0.54Down
Larval Salivary gland434 ± 224 of 4 0.67Down
Larval midgut564 ± 494 of 4 0.88None
Larval tubule408 ± 204 of 4 0.60Down
Larval hindgut536 ± 234 of 4 0.83None
Larval fat body500 ± 254 of 4 0.80Down
Larval trachea346 ± 214 of 4 0.54Down
Larval carcass568 ± 274 of 4 0.88None
S2 cells (growing)384 ± 24 of 4 0.60Down
Whole fly645 ± 374 of 4

Looking for CG9131-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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