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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9147-RB through 18771 annotations produced 1 hits



(CG9147):

Annotation Number : CG9147
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031774
Gbrowse : chr2L:6066185-6067628 (+) // 100.0 //
Probeset : 1635422_s_at
Accessions : protein= NP_608990; /// NP_723153;, nucleotide= NM_135146; /// NM_164680;
Interpro : "0016747 // transferase activity
FlyMine data for FBgn0031774.
VDRC has 3 RNAi stocks for FBgn0031774 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain96 ± 44 of 4 1.20None
Head54 ± 54 of 4 0.70Down
Eye90 ± 34 of 4 1.10None
Thoracicoabdominal ganglion100 ± 24 of 4 1.20None
Salivary gland58 ± 54 of 4 0.71Down
Crop32 ± 24 of 4 0.40Down
Midgut41 ± 44 of 4 0.50Down
Tubule35 ± 14 of 4 0.40Down
Hindgut47 ± 14 of 4 0.60Down
Heart39 ± 14 of 4 0.48Down
Fat body30 ± 34 of 4 0.37Down
Ovary55 ± 04 of 4 0.70Down
Testis435 ± 194 of 4 5.30Up
Male accessory glands25 ± 54 of 4 0.30Down
Virgin spermatheca28 ± 24 of 4 0.35Down
Mated spermatheca27 ± 24 of 4 0.34Down
Adult carcass29 ± 14 of 4 0.40Down
Larval CNS78 ± 14 of 4 0.95None
Larval Salivary gland57 ± 34 of 4 0.70Down
Larval midgut35 ± 34 of 4 0.43Down
Larval tubule49 ± 24 of 4 0.60Down
Larval hindgut41 ± 44 of 4 0.50Down
Larval fat body48 ± 94 of 4 0.60Down
Larval trachea69 ± 104 of 4 0.84None
Larval carcass63 ± 74 of 4 0.77None
S2 cells (growing)53 ± 14 of 4 0.65Down
Whole fly82 ± 64 of 4

Looking for CG9147-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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