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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9149-RA through 18771 annotations produced 1 hits



(CG9149):

Annotation Number : CG9149
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035203
Gbrowse : chr3L:1302948-1304721 (+) // 100.0 //
Probeset : 1637190_at
Accessions : protein= NP_612094;, nucleotide= NM_138250;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0003985 // acetyl-CoA C-acetyltransferase acti
FlyMine data for FBgn0035203.
BDGP gene expression has embryonic in situ data for CG9149: 17 pix of staining in 16 body parts.
Homophila reports that CG9149 is a close match (7e-43) to human gene HADHB (NP_000174), a gene associated with Trifunctional protein deficiency, 609015 (3).
TRiP has 1 RNAi stocks for FBgn0035203 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035203 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain204 54 of 4 0.80Down
Head148 114 of 4 0.60Down
Eye189 74 of 4 0.71Down
Thoracicoabdominal ganglion222 34 of 4 0.80Down
Salivary gland896 474 of 4 3.37Up
Crop455 134 of 4 1.70Up
Midgut230 164 of 4 0.90None
Tubule512 154 of 4 1.90Up
Hindgut519 264 of 4 2.00Up
Heart605 224 of 4 2.28Up
Fat body271 444 of 4 1.02None
Ovary335 54 of 4 1.30Up
Testis91 54 of 4 0.30Down
Male accessory glands286 124 of 4 1.10None
Virgin spermatheca292 104 of 4 1.10None
Mated spermatheca331 404 of 4 1.25None
Adult carcass259 164 of 4 1.00None
Larval CNS236 104 of 4 0.89Down
Larval Salivary gland1895 684 of 4 7.13Up
Larval midgut388 364 of 4 1.46Up
Larval tubule139 64 of 4 0.50Down
Larval hindgut617 314 of 4 2.32Up
Larval fat body304 564 of 4 1.10None
Larval trachea355 364 of 4 1.34Up
Larval carcass646 224 of 4 2.43Up
S2 cells (growing)223 44 of 4 0.84Down
Whole fly265 44 of 4

Looking for CG9149-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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