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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9154-RA through 18771 annotations produced 1 hits



(CG9154):

Annotation Number : CG9154
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031777
Gbrowse : chr2L:6069781-6070615 (-) // 100.0 //
Probeset : 1627459_at
Accessions : protein= NP_608993;, nucleotide= NM_135149;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // infe
FlyMine data for FBgn0031777.
BDGP gene expression has embryonic in situ data for CG9154: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0031777 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 ± 44 of 4 1.60Up
Head60 ± 34 of 4 1.00None
Eye67 ± 44 of 4 1.13None
Thoracicoabdominal ganglion71 ± 44 of 4 1.20None
Salivary gland77 ± 74 of 4 1.29None
Crop73 ± 44 of 4 1.20None
Midgut66 ± 04 of 4 1.10None
Tubule29 ± 24 of 4 0.50Down
Hindgut56 ± 14 of 4 0.90None
Heart52 ± 34 of 4 0.88None
Fat body50 ± 84 of 4 0.83None
Ovary83 ± 24 of 4 1.40Up
Testis44 ± 24 of 4 0.70Down
Male accessory glands146 ± 14 of 4 2.40Up
Virgin spermatheca46 ± 14 of 4 0.77None
Mated spermatheca55 ± 24 of 4 0.92None
Adult carcass54 ± 14 of 4 0.90None
Larval CNS164 ± 14 of 4 2.73Up
Larval Salivary gland120 ± 64 of 4 2.00Up
Larval midgut53 ± 44 of 4 0.89None
Larval tubule44 ± 44 of 4 0.70None
Larval hindgut60 ± 34 of 4 1.01None
Larval fat body52 ± 54 of 4 0.90None
Larval trachea162 ± 164 of 4 2.70Up
Larval carcass77 ± 64 of 4 1.29None
S2 cells (growing)79 ± 24 of 4 1.33Up
Whole fly60 ± 54 of 4

Looking for CG9154-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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