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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9156-RA through 18771 annotations produced 1 hits



Protein phosphatase 1 13C (Pp1-13C):

Annotation Number : CG9156
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003132
Gbrowse : chrX:15253131-15255094 (-) // 100.0 //
Probeset : 1628164_at
Accessions : protein= NP_524921;, nucleotide= NM_080182;
Pathway : 0000164 // protein phosphatase type 1 complex // inferred from sequence or structural similarity
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/thre
FlyMine data for FBgn0003132.
BioGrid reports that CG9156 interacts with CG10574 CG8980 .
TRiP has 1 RNAi stocks for FBgn0003132 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003132 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.10Down
Head1 00 of 4 0.00Down
Eye5 00 of 4 0.07Down
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland4 40 of 4 0.07Down
Crop2 00 of 4 0.00Down
Midgut6 00 of 4 0.10Down
Tubule3 00 of 4 0.00Down
Hindgut1 10 of 4 0.00Down
Heart3 10 of 4 0.05Down
Fat body4 10 of 4 0.06Down
Ovary1 10 of 4 0.00Down
Testis750 124 of 410.90Up
Male accessory glands2 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.03Down
Mated spermatheca3 00 of 4 0.04Down
Adult carcass3 10 of 4 0.10Down
Larval CNS3 02 of 4 0.05Down
Larval Salivary gland3 10 of 4 0.05Down
Larval midgut4 10 of 4 0.07Down
Larval tubule4 00 of 4 0.10Down
Larval hindgut1 00 of 4 0.03Down
Larval fat body76 313 of 4 1.10None
Larval trachea4 41 of 4 0.07Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)1 00 of 4 0.03Down
Whole fly69 64 of 4

Looking for CG9156-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime