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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9166-RA through 18771 annotations produced 1 hits



312 (312):

Annotation Number : CG9166
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029514
Gbrowse : chr3L:1351138-1352853 (+) // 100.0 //
Probeset : 1631018_at
Accessions : protein= NP_612105;, nucleotide= NM_138261;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029514.
BDGP gene expression has embryonic in situ data for 312: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0029514 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 24 of 4 8.80Up
Head20 ± 24 of 4 2.60Up
Eye18 ± 24 of 4 2.45Up
Thoracicoabdominal ganglion34 ± 14 of 4 4.40Up
Salivary gland3 ± 10 of 4 0.43Down
Crop3 ± 00 of 4 0.50Down
Midgut1 ± 00 of 4 0.10Down
Tubule5 ± 00 of 4 0.80Down
Hindgut3 ± 01 of 4 0.50Down
Heart3 ± 01 of 4 0.41Down
Fat body4 ± 01 of 4 0.56Down
Ovary10 ± 14 of 4 1.30None
Testis1 ± 00 of 4 0.20Down
Male accessory glands2 ± 20 of 4 0.40None
Virgin spermatheca4 ± 00 of 4 0.62Down
Mated spermatheca5 ± 01 of 4 0.67Down
Adult carcass8 ± 20 of 4 1.10None
Larval CNS35 ± 54 of 4 4.63Up
Larval Salivary gland0 ± 00 of 4 0.11Down
Larval midgut4 ± 01 of 4 0.54Down
Larval tubule3 ± 00 of 4 0.40Down
Larval hindgut4 ± 02 of 4 0.58Down
Larval fat body3 ± 10 of 4 0.40Down
Larval trachea4 ± 22 of 4 0.53None
Larval carcass4 ± 00 of 4 0.63Down
S2 cells (growing)6 ± 03 of 4 0.79None
Whole fly7 ± 03 of 4

Looking for CG9166-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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