Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9191-RA through 18771 annotations produced 1 hits


kinesin-like protein (Klp61F):

Annotation Number : CG9191
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004378
Gbrowse : chr3L:1241567-1245939 (-) // 100.0 //
Probeset : 1624620_at
Accessions : protein= NP_476818;, nucleotide= NM_057470;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct assay //
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from dire
FlyMine data for FBgn0004378.
BDGP gene expression has embryonic in situ data for Klp61F: 31 pix of staining in 16 body parts.
Homophila reports that CG9191 is a close match (1e-47) to human gene KIF5A;NKHC;SPG10 (NP_004975), a gene associated with Spastic paraplegia 10, 604187 (3).
TRiP has 2 RNAi stocks for FBgn0004378 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004378 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland9 ± 40 of 4 0.07Down
Crop82 ± 54 of 4 0.60Down
Midgut12 ± 50 of 4 0.10Down
Tubule4 ± 10 of 4 0.00Down
Hindgut36 ± 42 of 4 0.30Down
Heart19 ± 60 of 4 0.15Down
Fat body3 ± 10 of 4 0.02Down
Ovary304 ± 154 of 4 2.30Up
Testis79 ± 54 of 4 0.60Down
Male accessory glands11 ± 20 of 4 0.10Down
Virgin spermatheca5 ± 00 of 4 0.04Down
Mated spermatheca1 ± 00 of 4 0.01Down
Adult carcass6 ± 30 of 4 0.10Down
Larval CNS249 ± 164 of 4 1.90Up
Larval Salivary gland9 ± 10 of 4 0.07Down
Larval midgut15 ± 30 of 4 0.12Down
Larval tubule7 ± 20 of 4 0.10Down
Larval hindgut34 ± 11 of 4 0.27Down
Larval fat body36 ± 71 of 4 0.30Down
Larval trachea76 ± 44 of 4 0.58Down
Larval carcass74 ± 22 of 4 0.57Down
S2 cells (growing)345 ± 114 of 4 2.63Up
Whole fly131 ± 104 of 4

Looking for CG9191-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime