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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9200-RA through 18771 annotations produced 1 hits



CG9200 (Atac1):

Annotation Number : CG9200
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031876
Gbrowse : chr2L:6958832-6960276 (-) // 100.0 //
Probeset : 1624022_at
Accessions : protein= NP_609088;, nucleotide= NM_135244;
Pathway : 0043189 // H4/H2A histone acetyltransferase complex // inferred from direct assay
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0031876.
BDGP gene expression has embryonic in situ data for CG9200: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031876 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 13 of 4 0.60None
Head13 04 of 4 0.60Down
Eye17 04 of 4 0.87None
Thoracicoabdominal ganglion17 24 of 4 0.90None
Salivary gland38 52 of 4 1.88Up
Crop18 14 of 4 0.90None
Midgut14 23 of 4 0.70None
Tubule20 14 of 4 1.00None
Hindgut15 14 of 4 0.80None
Heart11 14 of 4 0.58Down
Fat body11 24 of 4 0.55Down
Ovary47 14 of 4 2.30Up
Testis14 13 of 4 0.70Down
Male accessory glands24 14 of 4 1.20None
Virgin spermatheca28 14 of 4 1.39Up
Mated spermatheca24 14 of 4 1.17None
Adult carcass16 34 of 4 0.80None
Larval CNS27 44 of 4 1.34Up
Larval Salivary gland22 24 of 4 1.08None
Larval midgut13 14 of 4 0.63Down
Larval tubule15 04 of 4 0.80None
Larval hindgut11 14 of 4 0.55Down
Larval fat body21 04 of 4 1.10None
Larval trachea17 34 of 4 0.85None
Larval carcass16 24 of 4 0.83None
S2 cells (growing)14 14 of 4 0.71Down
Whole fly20 14 of 4

Looking for CG9200-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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