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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9206-RA through 18771 annotations produced 1 hits



dynactin (Gl):

Annotation Number : CG9206
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001108
Gbrowse : chr3L:13922488-13927756 (+) // 100.0 //
Probeset : 1626483_at
Accessions : protein= NP_524061;, nucleotide= NM_079337;
Pathway : 0000776 // kinetochore // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 0005
Interpro : 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // non-tracea
FlyMine data for FBgn0001108.
BDGP gene expression has embryonic in situ data for Gl: 4 pix of staining in 1 body parts.
Homophila reports that CG9206 is a close match (4e-107) to human gene DCTN1;HMN7B (NP_075408), a gene associated with Neuropathy, distal hereditary motor, type VIIB, 607641 (3);{Amyotrophic lateral sclerosis, susceptibility to}, 105400 (3).
BioGrid reports that CG9206 interacts with CG3510 CG7507 CG7507 CG7507 CG7507 CG7507 CG7507 CG8269 CG7765 CG8440 CG18000 CG18000 CG18000 CG18000 .
TRiP has 1 RNAi stocks for FBgn0001108 available for purchase.
VDRC has 1 RNAi stocks for FBgn0001108 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain154 14 of 4 1.10Up
Head114 34 of 4 0.80Down
Eye102 54 of 4 0.74Down
Thoracicoabdominal ganglion141 24 of 4 1.00None
Salivary gland234 94 of 4 1.69Up
Crop144 34 of 4 1.00None
Midgut145 84 of 4 1.00None
Tubule213 64 of 4 1.50Up
Hindgut148 54 of 4 1.10None
Heart92 54 of 4 0.67Down
Fat body105 184 of 4 0.76Down
Ovary237 24 of 4 1.70Up
Testis105 64 of 4 0.80Down
Male accessory glands100 74 of 4 0.70Down
Virgin spermatheca116 54 of 4 0.84Down
Mated spermatheca136 124 of 4 0.99None
Adult carcass128 74 of 4 0.90None
Larval CNS144 74 of 4 1.04None
Larval Salivary gland246 114 of 4 1.77Up
Larval midgut202 34 of 4 1.46Up
Larval tubule194 84 of 4 1.40Up
Larval hindgut237 84 of 4 1.71Up
Larval fat body105 74 of 4 0.80Down
Larval trachea177 94 of 4 1.28Up
Larval carcass198 44 of 4 1.43Up
S2 cells (growing)181 54 of 4 1.31Up
Whole fly138 64 of 4

Looking for CG9206-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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