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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9209-RA through 18771 annotations produced 1 hits



vacuolar peduncle (vap):

Annotation Number : CG9209
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003969
Gbrowse : chrX:15894256-15897149 (-) // 100.0 //
Probeset : 1629859_s_at
Accessions : protein= NP_523361; /// NP_727925; /// NP_727926; /// NP_996482;, nucleotide= NM_078637; /// NM_167480; /// NM_167481; /// NM_206759;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005099 // Ras GTPase activator activity
FlyMine data for FBgn0003969.
Homophila reports that CG9209 is a close match (0) to human gene CMAVM;GAP;PKWS;RASA1 (NP_072179), a gene associated with Basal cell carcinoma, somatic (3);Capillary malformation-arteriovenous malformation, 608354 (3);Parkes Weber syndrome, 608355 (3).
TRiP has 1 RNAi stocks for FBgn0003969 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003969 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain314 ± 84 of 4 1.60Up
Head135 ± 14 of 4 0.70Down
Eye204 ± 84 of 4 1.03None
Thoracicoabdominal ganglion248 ± 104 of 4 1.30Up
Salivary gland122 ± 204 of 4 0.62Down
Crop222 ± 44 of 4 1.10Up
Midgut130 ± 104 of 4 0.70Down
Tubule52 ± 34 of 4 0.30Down
Hindgut117 ± 34 of 4 0.60Down
Heart66 ± 64 of 4 0.34Down
Fat body29 ± 74 of 4 0.15Down
Ovary492 ± 114 of 4 2.50Up
Testis59 ± 24 of 4 0.30Down
Male accessory glands377 ± 114 of 4 1.90Up
Virgin spermatheca46 ± 24 of 4 0.23Down
Mated spermatheca64 ± 54 of 4 0.32Down
Adult carcass57 ± 54 of 4 0.30Down
Larval CNS499 ± 134 of 4 2.52Up
Larval Salivary gland285 ± 184 of 4 1.44Up
Larval midgut214 ± 94 of 4 1.08None
Larval tubule201 ± 154 of 4 1.00None
Larval hindgut274 ± 94 of 4 1.39Up
Larval fat body204 ± 94 of 4 1.00None
Larval trachea346 ± 504 of 4 1.75Up
Larval carcass157 ± 184 of 4 0.80None
S2 cells (growing)771 ± 144 of 4 3.89Up
Whole fly198 ± 74 of 4

Looking for CG9209-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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