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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9215-RA through 18771 annotations produced 1 hits



(CG9215):

Annotation Number : CG9215
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030659
Gbrowse : chrX:15474962-15476905 (-) // 100.0 //
Probeset : 1636465_at
Accessions : protein= NP_573045;, nucleotide= NM_132817;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0030659.
BDGP gene expression has embryonic in situ data for CG9215: 13 pix of staining in 6 body parts.
Homophila reports that CG9215 is a close match (7e-12) to human gene AITD3;ZFAT1;ZNF406 (NP_001025110), a gene associated with {Autoimmune thyroid disease, susceptibility to, 3}, 608175 (3).
VDRC has 3 RNAi stocks for FBgn0030659 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 ± 34 of 4 0.90None
Head33 ± 24 of 4 0.60Down
Eye34 ± 24 of 4 0.65Down
Thoracicoabdominal ganglion38 ± 24 of 4 0.70Down
Salivary gland43 ± 12 of 4 0.80Down
Crop43 ± 34 of 4 0.80None
Midgut23 ± 23 of 4 0.40Down
Tubule29 ± 24 of 4 0.50Down
Hindgut42 ± 24 of 4 0.80Down
Heart26 ± 14 of 4 0.48Down
Fat body22 ± 33 of 4 0.41Down
Ovary98 ± 34 of 4 1.80Up
Testis44 ± 24 of 4 0.80Down
Male accessory glands52 ± 44 of 4 1.00None
Virgin spermatheca24 ± 14 of 4 0.46Down
Mated spermatheca31 ± 04 of 4 0.58Down
Adult carcass29 ± 44 of 4 0.50Down
Larval CNS71 ± 74 of 4 1.34Up
Larval Salivary gland72 ± 34 of 4 1.35Up
Larval midgut24 ± 12 of 4 0.45Down
Larval tubule29 ± 14 of 4 0.50Down
Larval hindgut41 ± 14 of 4 0.77Down
Larval fat body40 ± 54 of 4 0.80None
Larval trachea49 ± 74 of 4 0.93None
Larval carcass31 ± 14 of 4 0.59Down
S2 cells (growing)71 ± 24 of 4 1.33Up
Whole fly53 ± 14 of 4

Looking for CG9215-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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