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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9216-RA through 18771 annotations produced 1 hits



/// (CG42353 /// CG42354):

Annotation Number : CG9216
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259699 /// FBgn0259700
Gbrowse : chrX:15987102-15998945 (-) // 100.0 //
Probeset : 1630280_s_at
Accessions : protein= NP_001138201; /// NP_001138202; /// NP_573106; /// NP_727936; /// NP_727937;, nucleotide= NM_001144729; /// NM_001144730; /// NM_132878; /// NM_167485; /// NM_167486;
FlyMine data for FBgn0259699 /// FBgn0259700.
BioGrid reports that CG9216 interacts with CG9749 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain758 ± 134 of 4 2.40Up
Head488 ± 444 of 4 1.60Up
Eye700 ± 814 of 4 2.25Up
Thoracicoabdominal ganglion782 ± 174 of 4 2.50Up
Salivary gland668 ± 174 of 4 2.15Up
Crop1039 ± 364 of 4 3.30Up
Midgut454 ± 124 of 4 1.50Up
Tubule650 ± 144 of 4 2.10Up
Hindgut818 ± 274 of 4 2.60Up
Heart588 ± 224 of 4 1.89Up
Fat body704 ± 764 of 4 2.27Up
Ovary549 ± 114 of 4 1.80Up
Testis85 ± 44 of 4 0.30Down
Male accessory glands1511 ± 444 of 4 4.90Up
Virgin spermatheca620 ± 474 of 4 1.99Up
Mated spermatheca597 ± 284 of 4 1.92Up
Adult carcass594 ± 134 of 4 1.90Up
Larval CNS409 ± 324 of 4 1.32Up
Larval Salivary gland221 ± 144 of 4 0.71Down
Larval midgut872 ± 454 of 4 2.81Up
Larval tubule990 ± 384 of 4 3.20Up
Larval hindgut781 ± 324 of 4 2.51Up
Larval fat body316 ± 294 of 4 1.00None
Larval trachea497 ± 694 of 4 1.60Up
Larval carcass500 ± 274 of 4 1.61Up
S2 cells (growing)578 ± 104 of 4 1.86Up
Whole fly310 ± 184 of 4

Looking for CG9216-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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