Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9220-RA through 18771 annotations produced 1 hits



(CG9220):

Annotation Number : CG9220
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030662
Gbrowse : chrX:15480026-15483964 (-) // 100.0 //
Probeset : 1628495_at
Accessions : protein= NP_996440;, nucleotide= NM_206717;
Pathway : 0032580 // Golgi cisterna membrane // inferred from electronic annotation
Interpro : "0008375 // acetylglucosaminyltransferase activity // non-traceable author statement /// 0015020 // glucuronosyltransfer
FlyMine data for FBgn0030662.
VDRC has 3 RNAi stocks for FBgn0030662 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 34 of 4 3.10Up
Head28 14 of 4 2.60Up
Eye9 14 of 4 0.85None
Thoracicoabdominal ganglion46 44 of 4 4.30Up
Salivary gland14 30 of 4 1.29None
Crop60 24 of 4 5.50Up
Midgut23 24 of 4 2.10Up
Tubule19 34 of 4 1.80Up
Hindgut51 34 of 4 4.70Up
Heart23 14 of 4 2.14Up
Fat body29 133 of 4 2.70None
Ovary5 10 of 4 0.50Down
Testis2 00 of 4 0.20Down
Male accessory glands8 10 of 4 0.80None
Virgin spermatheca10 14 of 4 0.98None
Mated spermatheca11 13 of 4 1.08None
Adult carcass25 21 of 4 2.30Up
Larval CNS20 52 of 4 1.90Up
Larval Salivary gland37 34 of 4 3.40Up
Larval midgut19 24 of 4 1.76Up
Larval tubule38 14 of 4 3.50Up
Larval hindgut55 34 of 4 5.06Up
Larval fat body101 104 of 4 9.20Up
Larval trachea35 64 of 4 3.25Up
Larval carcass42 44 of 4 3.88Up
S2 cells (growing)276 164 of 425.22Up
Whole fly11 03 of 4

Looking for CG9220-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime