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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9224-RA through 18771 annotations produced 1 hits



chrX:15498602-15520573 (-) // 100.0 // (short gastrulation):

Annotation Number : CG9224
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630142_at
Accessions : protein= , nucleotide= NP_476736;
Pathway : "0007275 // multicellular organismal development // inferred from electronic annotation /// 0007313 // maternal specific
Interpro : oocyte
FlyMine data for full length.
Homophila reports that CG9224 is a close match (6e-12) to human gene FRAS1 (NP_079350), a gene associated with Fraser syndrome, 219000 (3).
BioGrid reports that CG9224 interacts with CG5848 CG6667 CG9885 CG9885 CG9885 CG9885 CG12399 CG1775 CG9885 CG5562 CG4943 CG1004 CG1004 CG31695 CG31695 CG31695 CG6868 CG1502 CG1502 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 24 of 4 1.70None
Head22 ± 24 of 4 2.00Up
Eye56 ± 24 of 4 5.10Up
Thoracicoabdominal ganglion28 ± 24 of 4 2.60Up
Salivary gland26 ± 43 of 4 2.43Up
Crop45 ± 24 of 4 4.10Up
Midgut6 ± 11 of 4 0.50None
Tubule4 ± 00 of 4 0.40Down
Hindgut24 ± 24 of 4 2.30Up
Heart96 ± 84 of 4 8.79Up
Fat body14 ± 24 of 4 1.34None
Ovary2 ± 01 of 4 0.20Down
Testis9 ± 14 of 4 0.90None
Male accessory glands24 ± 21 of 4 2.20Up
Virgin spermatheca3 ± 00 of 4 0.31Down
Mated spermatheca3 ± 10 of 4 0.33Down
Adult carcass33 ± 54 of 4 3.00Up
Larval CNS10 ± 44 of 4 0.98None
Larval Salivary gland2 ± 00 of 4 0.20Down
Larval midgut32 ± 44 of 4 2.95Up
Larval tubule9 ± 12 of 4 0.80None
Larval hindgut56 ± 64 of 4 5.09Up
Larval fat body1 ± 00 of 4 0.20Down
Larval trachea90 ± 234 of 4 8.24Up
Larval carcass46 ± 34 of 4 4.21Up
S2 cells (growing)12 ± 14 of 4 1.16None
Whole fly11 ± 13 of 4

Looking for CG9224-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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