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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9226-RA through 18771 annotations produced 1 hits



WD repeat domain 79 homolog (WDR79):

Annotation Number : CG9226
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031782
Gbrowse : chr2L:6125878-6127762 (-) // 100.0 //
Probeset : 1630755_at
Accessions : protein= NP_608997;, nucleotide= NM_135153;
Interpro : 0019001 // guanyl nucleotide binding // inferred from sequence or structural similarity /// 0034512 // box C/D snoRNA bi
FlyMine data for FBgn0031782.
TRiP has 2 RNAi stocks for FBgn0031782 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031782 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 ± 24 of 4 0.80None
Head21 ± 24 of 4 0.40Down
Eye26 ± 24 of 4 0.45Down
Thoracicoabdominal ganglion49 ± 14 of 4 0.90Down
Salivary gland22 ± 21 of 4 0.39Down
Crop35 ± 24 of 4 0.60Down
Midgut22 ± 04 of 4 0.40Down
Tubule20 ± 04 of 4 0.30Down
Hindgut24 ± 04 of 4 0.40Down
Heart17 ± 13 of 4 0.30Down
Fat body11 ± 13 of 4 0.19Down
Ovary106 ± 24 of 4 1.80Up
Testis47 ± 24 of 4 0.80Down
Male accessory glands42 ± 24 of 4 0.70Down
Virgin spermatheca18 ± 14 of 4 0.32Down
Mated spermatheca14 ± 14 of 4 0.25Down
Adult carcass22 ± 14 of 4 0.40Down
Larval CNS86 ± 94 of 4 1.49Up
Larval Salivary gland37 ± 24 of 4 0.64Down
Larval midgut20 ± 23 of 4 0.35Down
Larval tubule14 ± 13 of 4 0.30Down
Larval hindgut37 ± 24 of 4 0.64Down
Larval fat body19 ± 34 of 4 0.30Down
Larval trachea77 ± 34 of 4 1.33Up
Larval carcass26 ± 24 of 4 0.45Down
S2 cells (growing)131 ± 74 of 4 2.27Up
Whole fly58 ± 24 of 4

Looking for CG9226-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime