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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9235-RA through 18771 annotations produced 1 hits



(CG9235):

Annotation Number : CG9235
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034560
Gbrowse : chr2R:16797208-16798313 (+) // 100.0 //
Probeset : 1631848_at
Accessions : protein= NP_611525;, nucleotide= NM_137681;
Interpro : 0004089 // carbonate dehydratase activity // inferred from sequence or structural similarity /// 0004089 // carbonate de
FlyMine data for FBgn0034560.
Homophila reports that CG9235 is a close match (8e-14) to human gene CA4;RP17 (NP_000708), a gene associated with Retinitis pigmentosa-17, 600852 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 00 of 4 0.30Down
Head9 ± 21 of 4 0.30Down
Eye6 ± 01 of 4 0.23Down
Thoracicoabdominal ganglion10 ± 10 of 4 0.40Down
Salivary gland27 ± 52 of 4 0.97None
Crop10 ± 13 of 4 0.40Down
Midgut8 ± 10 of 4 0.30Down
Tubule11 ± 10 of 4 0.40Down
Hindgut13 ± 22 of 4 0.50Down
Heart5 ± 10 of 4 0.19Down
Fat body11 ± 10 of 4 0.42Down
Ovary4 ± 00 of 4 0.20Down
Testis281 ± 134 of 410.00Up
Male accessory glands4 ± 20 of 4 0.20Down
Virgin spermatheca11 ± 02 of 4 0.41Down
Mated spermatheca9 ± 11 of 4 0.35Down
Adult carcass13 ± 11 of 4 0.50Down
Larval CNS8 ± 11 of 4 0.29Down
Larval Salivary gland11 ± 30 of 4 0.42Down
Larval midgut15 ± 24 of 4 0.55Down
Larval tubule13 ± 11 of 4 0.50Down
Larval hindgut9 ± 11 of 4 0.33Down
Larval fat body43 ± 143 of 4 1.50None
Larval trachea2 ± 11 of 4 0.10Down
Larval carcass11 ± 20 of 4 0.41Down
S2 cells (growing)8 ± 11 of 4 0.29Down
Whole fly28 ± 14 of 4

Looking for CG9235-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime