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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9236-RA through 18771 annotations produced 1 hits



chr2R:16767553-16769910 (+) // 100.0 // ():

Annotation Number : CG9236
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1627748_at
Accessions : protein= , nucleotide= NP_611523;
FlyMine data for full length.
BioGrid reports that CG9236 interacts with CG10246 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.70None
Head7 ± 10 of 4 2.40None
Eye11 ± 13 of 4 3.99Up
Thoracicoabdominal ganglion13 ± 13 of 4 4.60Up
Salivary gland10 ± 40 of 4 3.57None
Crop5 ± 10 of 4 1.90None
Midgut3 ± 00 of 4 1.10None
Tubule3 ± 00 of 4 1.10None
Hindgut7 ± 20 of 4 2.50None
Heart7 ± 10 of 4 2.41None
Fat body10 ± 60 of 4 3.67None
Ovary1 ± 00 of 4 0.40None
Testis3 ± 10 of 4 1.10None
Male accessory glands7 ± 30 of 4 2.70None
Virgin spermatheca2 ± 10 of 4 0.98None
Mated spermatheca7 ± 20 of 4 2.50None
Adult carcass7 ± 00 of 4 2.40Up
Larval CNS11 ± 23 of 4 3.75Up
Larval Salivary gland6 ± 10 of 4 2.27None
Larval midgut3 ± 10 of 4 1.22None
Larval tubule4 ± 20 of 4 1.50None
Larval hindgut4 ± 10 of 4 1.53None
Larval fat body5 ± 10 of 4 1.80None
Larval trachea8 ± 31 of 4 3.02Up
Larval carcass14 ± 41 of 4 4.88None
S2 cells (growing)6 ± 10 of 4 2.15Up
Whole fly3 ± 00 of 4

Looking for CG9236-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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