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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9244-RB through 18771 annotations produced 1 hits



m-Aconitase (Acon):

Annotation Number : CG9244
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010100
Gbrowse : chr2L:21168355-21173024 (+) // 100.0 //
Probeset : 1634989_at
Accessions : protein= NP_001097186; /// NP_001163030; /// NP_524708;, nucleotide= NM_001103716; /// NM_001169559; /// NM_079969;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // non-traceabl
Interpro : "0003994 // aconitate hydratase activity // inferred from sequence or structural similarity /// 0003994 // aconitate hyd
FlyMine data for FBgn0010100.
TRiP has 1 RNAi stocks for FBgn0010100 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010100 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2071 ± 574 of 4 0.90None
Head2481 ± 884 of 4 1.10None
Eye1398 ± 774 of 4 0.63Down
Thoracicoabdominal ganglion2350 ± 854 of 4 1.10None
Salivary gland3341 ± 1024 of 4 1.50Up
Crop2124 ± 434 of 4 1.00None
Midgut2606 ± 294 of 4 1.20Up
Tubule3759 ± 1874 of 4 1.70Up
Hindgut2998 ± 644 of 4 1.30Up
Heart1976 ± 1134 of 4 0.89None
Fat body2447 ± 2224 of 4 1.10None
Ovary953 ± 204 of 4 0.40Down
Testis145 ± 24 of 4 0.10Down
Male accessory glands849 ± 174 of 4 0.40Down
Virgin spermatheca1725 ± 674 of 4 0.77Down
Mated spermatheca1635 ± 644 of 4 0.73Down
Adult carcass5567 ± 834 of 4 2.50Up
Larval CNS1086 ± 914 of 4 0.49Down
Larval Salivary gland1661 ± 364 of 4 0.74Down
Larval midgut1535 ± 1054 of 4 0.69Down
Larval tubule3163 ± 1854 of 4 1.40Up
Larval hindgut2635 ± 814 of 4 1.18Up
Larval fat body740 ± 724 of 4 0.30Down
Larval trachea1257 ± 924 of 4 0.56Down
Larval carcass3030 ± 2914 of 4 1.36None
S2 cells (growing)901 ± 184 of 4 0.40Down
Whole fly2232 ± 734 of 4

Looking for CG9244-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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