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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9254-RA through 18771 annotations produced 1 hits



(CG9254):

Annotation Number : CG9254
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028513
Gbrowse : chr2L:13595501-13597186 (-) // 100.0 //
Probeset : 1623055_at
Accessions : protein= NP_609664;, nucleotide= NM_135820;
Interpro : 0005436 // sodium:phosphate symporter activity // inferred from sequence or structural similarity /// 0005515 // protein
FlyMine data for FBgn0028513.
Homophila reports that CG9254 is a close match (2e-63) to human gene DFNA25;SLC17A8;VGLUT3 (NP_647480), a gene associated with Deafness, autosomal dominant 25, 605583 (3).
VDRC has 2 RNAi stocks for FBgn0028513 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head7 10 of 4 0.00Down
Eye8 11 of 4 0.02Down
Thoracicoabdominal ganglion10 12 of 4 0.00Down
Salivary gland14 40 of 4 0.04Down
Crop6 30 of 4 0.00Down
Midgut6 20 of 4 0.00Down
Tubule10 10 of 4 0.00Down
Hindgut8 10 of 4 0.00Down
Heart5 21 of 4 0.02Down
Fat body11 31 of 4 0.03Down
Ovary5 10 of 4 0.00Down
Testis2491 564 of 4 7.30Up
Male accessory glands17 21 of 4 0.00Down
Virgin spermatheca7 10 of 4 0.02Down
Mated spermatheca9 22 of 4 0.03Down
Adult carcass17 52 of 4 0.10Down
Larval CNS5 20 of 4 0.02Down
Larval Salivary gland11 20 of 4 0.03Down
Larval midgut15 12 of 4 0.05Down
Larval tubule8 11 of 4 0.00Down
Larval hindgut10 02 of 4 0.03Down
Larval fat body356 1664 of 4 1.00None
Larval trachea19 203 of 4 0.06Down
Larval carcass11 10 of 4 0.03Down
S2 cells (growing)7 00 of 4 0.02Down
Whole fly343 324 of 4

Looking for CG9254-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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