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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9258-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2L:6778553-6786849 (-) // 100.0 //):

Annotation Number : CG9258
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr2-
Gbrowse :
Probeset : 1640364_at
Accessions : protein= EC:3.6.3.9, nucleotide=
Interpro : 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006810 // transport // inferred from ele
FlyMine data for chr2-.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 ± 44 of 4 0.10Down
Head1197 ± 374 of 4 1.10None
Eye1490 ± 194 of 4 1.35Up
Thoracicoabdominal ganglion132 ± 24 of 4 0.10Down
Salivary gland3561 ± 1264 of 4 3.23Up
Crop2112 ± 594 of 4 1.90Up
Midgut1327 ± 354 of 4 1.20Up
Tubule4556 ± 834 of 4 4.10Up
Hindgut2922 ± 1544 of 4 2.70Up
Heart1119 ± 1154 of 4 1.02None
Fat body1259 ± 1074 of 4 1.14None
Ovary1240 ± 174 of 4 1.10None
Testis92 ± 24 of 4 0.10Down
Male accessory glands706 ± 154 of 4 0.60Down
Virgin spermatheca1847 ± 1134 of 4 1.68Up
Mated spermatheca1930 ± 704 of 4 1.75Up
Adult carcass1356 ± 154 of 4 1.20Up
Larval CNS223 ± 284 of 4 0.20Down
Larval Salivary gland694 ± 474 of 4 0.63Down
Larval midgut1498 ± 324 of 4 1.36Up
Larval tubule2272 ± 854 of 4 2.10Up
Larval hindgut2277 ± 294 of 4 2.07Up
Larval fat body391 ± 274 of 4 0.40Down
Larval trachea669 ± 364 of 4 0.61Down
Larval carcass1840 ± 334 of 4 1.67Up
S2 cells (growing)1637 ± 614 of 4 1.49Up
Whole fly1102 ± 514 of 4

Looking for CG9258-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime