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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9263-RA through 18771 annotations produced 1 hits



/// yolk protein 1 (CG9263 /// Yp1):

Annotation Number : CG9263
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032530
Gbrowse : chr2L:13541674-13542576 (-) // 100.0 //
Probeset : 1637392_at
Accessions : protein= NP_609662;, nucleotide= NM_135818;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from d
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005198 // structural molecule activity // infe
FlyMine data for FBgn0032530.
VDRC has 3 RNAi stocks for FBgn0032530 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland8 ± 50 of 4 0.07Down
Crop3 ± 10 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.01Down
Fat body2 ± 20 of 4 0.02Down
Ovary1 ± 00 of 4 0.00Down
Testis1058 ± 444 of 4 8.90Up
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca3 ± 10 of 4 0.03Down
Adult carcass5 ± 20 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.02Down
Larval Salivary gland5 ± 10 of 4 0.05Down
Larval midgut1 ± 00 of 4 0.01Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body101 ± 573 of 4 0.90None
Larval trachea5 ± 91 of 4 0.05Down
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)5 ± 10 of 4 0.05Down
Whole fly118 ± 54 of 4

Looking for CG9263-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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