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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9270-RA through 18771 annotations produced 1 hits



(CG9270):

Annotation Number : CG9270
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032908
Gbrowse : chr2L:20929451-20933249 (-) // 100.0 //
Probeset : 1632582_at
Accessions : protein= NP_610079; /// NP_995741;, nucleotide= NM_136235; /// NM_206019;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation /// 0043190 // ATP-binding cassette (ABC) transpo
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0032908.
Homophila reports that CG9270 is a close match (1e-19) to human gene ABCB2;PSF1;RING4;TAP1 (NP_000584), a gene associated with Bare lymphocyte syndrome, type I, 604571 (3).
TRiP has 1 RNAi stocks for FBgn0032908 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032908 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.20Down
Head4 ± 10 of 4 0.30Down
Eye2 ± 10 of 4 0.20Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland12 ± 20 of 4 0.93None
Crop1 ± 00 of 4 0.10Down
Midgut0 ± 00 of 4 0.10Down
Tubule1106 ± 1364 of 481.20Up
Hindgut7 ± 11 of 4 0.60None
Heart2 ± 00 of 4 0.16Down
Fat body4 ± 30 of 4 0.34Down
Ovary2 ± 00 of 4 0.20Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands6 ± 20 of 4 0.50None
Virgin spermatheca4 ± 10 of 4 0.32Down
Mated spermatheca7 ± 10 of 4 0.51None
Adult carcass2 ± 10 of 4 0.20Down
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland3 ± 20 of 4 0.22Down
Larval midgut1 ± 00 of 4 0.07Down
Larval tubule4 ± 10 of 4 0.30Down
Larval hindgut1 ± 00 of 4 0.13Down
Larval fat body6 ± 20 of 4 0.50None
Larval trachea0 ± 00 of 4 0.07Down
Larval carcass0 ± 00 of 4 0.05Down
S2 cells (growing)77 ± 44 of 4 5.70Up
Whole fly13 ± 23 of 4

Looking for CG9270-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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