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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9272-RA through 18771 annotations produced 1 hits



(CG9272):

Annotation Number : CG9272
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032907
Gbrowse : chr2L:20926447-20927815 (-) // 100.0 //
Probeset : 1624901_at
Accessions : protein= NP_610078;, nucleotide= NM_136234;
Interpro : "0000703 // oxidized pyrimidine base lesion DNA N-glycosylase activity // inferred from sequence or structural similarit
FlyMine data for FBgn0032907.
BDGP gene expression has embryonic in situ data for CG9272: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0032907 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032907 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 ± 04 of 4 0.50Down
Head30 ± 34 of 4 0.40Down
Eye43 ± 14 of 4 0.51Down
Thoracicoabdominal ganglion47 ± 24 of 4 0.60Down
Salivary gland26 ± 52 of 4 0.32Down
Crop82 ± 24 of 4 1.00None
Midgut24 ± 64 of 4 0.30Down
Tubule66 ± 24 of 4 0.80Down
Hindgut46 ± 24 of 4 0.50Down
Heart16 ± 14 of 4 0.20Down
Fat body23 ± 24 of 4 0.28Down
Ovary181 ± 54 of 4 2.10Up
Testis97 ± 64 of 4 1.10None
Male accessory glands33 ± 34 of 4 0.40Down
Virgin spermatheca27 ± 24 of 4 0.33Down
Mated spermatheca37 ± 34 of 4 0.44Down
Adult carcass21 ± 34 of 4 0.30Down
Larval CNS54 ± 34 of 4 0.64Down
Larval Salivary gland14 ± 02 of 4 0.17Down
Larval midgut13 ± 00 of 4 0.16Down
Larval tubule79 ± 14 of 4 0.90None
Larval hindgut15 ± 24 of 4 0.19Down
Larval fat body23 ± 33 of 4 0.30Down
Larval trachea24 ± 24 of 4 0.28Down
Larval carcass17 ± 04 of 4 0.20Down
S2 cells (growing)104 ± 34 of 4 1.23None
Whole fly84 ± 74 of 4

Looking for CG9272-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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