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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9273-RA through 18771 annotations produced 1 hits

CG9273 (RPA2):

Annotation Number : CG9273
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032906
Gbrowse : chr2L:20924974-20926144 (-) // 100.0 //
Probeset : 1639224_at
Accessions : protein= NP_610077;, nucleotide= NM_136233;
Pathway : 0005662 // DNA replication factor A complex // inferred from sequence or structural similarity
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred fro
FlyMine data for FBgn0032906.
BDGP gene expression has embryonic in situ data for CG9273: 16 pix of staining in 8 body parts.
BioGrid reports that CG9273 interacts with CG9790 CG7296 CG14534 CG2948 CG17508 CG5708 CG11182 CG3629 CG7948 CG15218 CG4965 CG31679 CG11963 CG31811 CG7281 CG3925 CG11266 CG3938 CG8823 CG4673 CG17309 CG1765 CG9027 CG15220 CG6570 CG30440 CG7924 .
TRiP has 1 RNAi stocks for FBgn0032906 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032906 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 24 of 4 0.10Down
Head30 34 of 4 0.10Down
Eye30 24 of 4 0.10Down
Thoracicoabdominal ganglion59 34 of 4 0.20Down
Salivary gland19 24 of 4 0.06Down
Crop30 34 of 4 0.10Down
Midgut38 44 of 4 0.10Down
Tubule29 44 of 4 0.10Down
Hindgut31 14 of 4 0.10Down
Heart31 24 of 4 0.10Down
Fat body26 64 of 4 0.08Down
Ovary709 194 of 4 2.20Up
Testis94 64 of 4 0.30Down
Male accessory glands11 10 of 4 0.00Down
Virgin spermatheca28 24 of 4 0.09Down
Mated spermatheca26 14 of 4 0.08Down
Adult carcass31 54 of 4 0.10Down
Larval CNS514 284 of 4 1.62Up
Larval Salivary gland195 24 of 4 0.61Down
Larval midgut47 14 of 4 0.15Down
Larval tubule49 44 of 4 0.20Down
Larval hindgut105 74 of 4 0.33Down
Larval fat body55 44 of 4 0.20Down
Larval trachea250 354 of 4 0.79Down
Larval carcass115 94 of 4 0.36Down
S2 cells (growing)541 144 of 4 1.70Up
Whole fly317 84 of 4

Looking for CG9273-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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