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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9281-RB through 18771 annotations produced 1 hits



(CG9281):

Annotation Number : CG9281
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030672
Gbrowse : chrX:15599838-15604631 (-) // 100.0 //
Probeset : 1639700_s_at
Accessions : protein= NP_573057; /// NP_727881;, nucleotide= NM_132829; /// NM_167458;
Pathway : 0043190 // ATP-binding cassette (ABC) transporter complex // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0030672.
BDGP gene expression has embryonic in situ data for CG9281: 15 pix of staining in 8 body parts.
VDRC has 1 RNAi stocks for FBgn0030672 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain364 ± 74 of 4 1.30Up
Head280 ± 194 of 4 1.00None
Eye144 ± 114 of 4 0.51Down
Thoracicoabdominal ganglion350 ± 244 of 4 1.20None
Salivary gland446 ± 524 of 4 1.58Up
Crop645 ± 364 of 4 2.30Up
Midgut265 ± 54 of 4 0.90None
Tubule164 ± 34 of 4 0.60Down
Hindgut349 ± 194 of 4 1.20Up
Heart271 ± 294 of 4 0.96None
Fat body589 ± 864 of 4 2.09Up
Ovary334 ± 94 of 4 1.20Up
Testis25 ± 14 of 4 0.10Down
Male accessory glands726 ± 474 of 4 2.60Up
Virgin spermatheca579 ± 284 of 4 2.05Up
Mated spermatheca688 ± 204 of 4 2.44Up
Adult carcass281 ± 284 of 4 1.00None
Larval CNS570 ± 624 of 4 2.02Up
Larval Salivary gland546 ± 494 of 4 1.93Up
Larval midgut253 ± 114 of 4 0.90None
Larval tubule228 ± 264 of 4 0.80None
Larval hindgut463 ± 484 of 4 1.64Up
Larval fat body85 ± 114 of 4 0.30Down
Larval trachea559 ± 654 of 4 1.98Up
Larval carcass612 ± 934 of 4 2.17Up
S2 cells (growing)615 ± 334 of 4 2.18Up
Whole fly282 ± 114 of 4

Looking for CG9281-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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