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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9282-RA through 18771 annotations produced 1 hits



Ribosomal protein L24 (RpL24):

Annotation Number : CG9282
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032518
Gbrowse : chr2L:13394118-13395115 (-) // 100.0 //
Probeset : 1641600_at
Accessions : protein= NP_609649;, nucleotide= NM_135805;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0032518.
BDGP gene expression has embryonic in situ data for CG9282: 4 pix of staining in 1 body parts.
BioGrid reports that CG9282 interacts with Dmel CG34383 .
TRiP has 1 RNAi stocks for FBgn0032518 available for purchase.
VDRC has 1 RNAi stocks for FBgn0032518 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1790 ± 814 of 4 0.70Down
Head3076 ± 1444 of 4 1.20None
Eye3049 ± 614 of 4 1.15Up
Thoracicoabdominal ganglion2879 ± 1204 of 4 1.10None
Salivary gland5396 ± 1894 of 4 2.04Up
Crop3848 ± 1364 of 4 1.50Up
Midgut2914 ± 284 of 4 1.10None
Tubule2594 ± 494 of 4 1.00None
Hindgut3404 ± 494 of 4 1.30Up
Heart3592 ± 2454 of 4 1.36Up
Fat body4505 ± 3044 of 4 1.70Up
Ovary2588 ± 614 of 4 1.00None
Testis805 ± 224 of 4 0.30Down
Male accessory glands6328 ± 1814 of 4 2.40Up
Virgin spermatheca4544 ± 1124 of 4 1.72Up
Mated spermatheca4680 ± 1304 of 4 1.77Up
Adult carcass3577 ± 1474 of 4 1.40Up
Larval CNS2326 ± 1244 of 4 0.88None
Larval Salivary gland4587 ± 1344 of 4 1.74Up
Larval midgut2508 ± 964 of 4 0.95None
Larval tubule3110 ± 984 of 4 1.20Up
Larval hindgut3309 ± 374 of 4 1.25Up
Larval fat body4101 ± 4894 of 4 1.60None
Larval trachea3596 ± 794 of 4 1.36Up
Larval carcass3310 ± 2784 of 4 1.25None
S2 cells (growing)3007 ± 374 of 4 1.14None
Whole fly2642 ± 1204 of 4

Looking for CG9282-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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