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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9300-RA through 18771 annotations produced 1 hits



(CG9300):

Annotation Number : CG9300
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036886
Gbrowse : chr3L:19545521-19547872 (+) // 100.0 //
Probeset : 1625096_at
Accessions : protein= NP_649127;, nucleotide= NM_140870;
Pathway : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0036886.
BDGP gene expression has embryonic in situ data for CG9300: 18 pix of staining in 18 body parts.
BioGrid reports that CG9300 interacts with CG9624 .
VDRC has 2 RNAi stocks for FBgn0036886 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain56 24 of 4 0.50Down
Head49 44 of 4 0.50Down
Eye34 14 of 4 0.33Down
Thoracicoabdominal ganglion69 34 of 4 0.70Down
Salivary gland68 34 of 4 0.65Down
Crop50 34 of 4 0.50Down
Midgut64 34 of 4 0.60Down
Tubule68 74 of 4 0.70Down
Hindgut55 24 of 4 0.50Down
Heart47 34 of 4 0.46Down
Fat body65 84 of 4 0.63Down
Ovary205 34 of 4 2.00Up
Testis59 54 of 4 0.60Down
Male accessory glands121 34 of 4 1.20Up
Virgin spermatheca61 34 of 4 0.59Down
Mated spermatheca91 14 of 4 0.87None
Adult carcass57 63 of 4 0.60Down
Larval CNS110 24 of 4 1.06None
Larval Salivary gland84 74 of 4 0.81None
Larval midgut42 34 of 4 0.41Down
Larval tubule36 24 of 4 0.30Down
Larval hindgut62 44 of 4 0.60Down
Larval fat body27 41 of 4 0.30Down
Larval trachea150 154 of 4 1.45Up
Larval carcass88 154 of 4 0.85None
S2 cells (growing)69 14 of 4 0.66Down
Whole fly104 44 of 4

Looking for CG9300-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime