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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9302-RA through 18771 annotations produced 1 hits



(CG9302):

Annotation Number : CG9302
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032514
Gbrowse : chr2L:13376448-13378546 (-) // 100.0 //
Probeset : 1638236_at
Accessions : protein= NP_609645;, nucleotide= NM_135801;
Interpro : 0003756 // protein disulfide isomerase activity // inferred from sequence or structural similarity /// 0003756 // protei
FlyMine data for FBgn0032514.
BDGP gene expression has embryonic in situ data for CG9302: 12 pix of staining in 15 body parts.
VDRC has 3 RNAi stocks for FBgn0032514 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 24 of 4 0.50Down
Head49 34 of 4 0.40Down
Eye39 34 of 4 0.29Down
Thoracicoabdominal ganglion65 24 of 4 0.50Down
Salivary gland111 94 of 4 0.80None
Crop64 04 of 4 0.50Down
Midgut26 34 of 4 0.20Down
Tubule42 64 of 4 0.30Down
Hindgut54 14 of 4 0.40Down
Heart100 104 of 4 0.73Down
Fat body73 134 of 4 0.53Down
Ovary268 124 of 4 1.90Up
Testis55 34 of 4 0.40Down
Male accessory glands341 224 of 4 2.50Up
Virgin spermatheca107 54 of 4 0.77Down
Mated spermatheca120 104 of 4 0.87None
Adult carcass57 74 of 4 0.40Down
Larval CNS232 224 of 4 1.68Up
Larval Salivary gland400 314 of 4 2.89Up
Larval midgut28 04 of 4 0.20Down
Larval tubule86 34 of 4 0.60Down
Larval hindgut138 94 of 4 1.00None
Larval fat body59 64 of 4 0.40Down
Larval trachea164 374 of 4 1.19None
Larval carcass195 134 of 4 1.41Up
S2 cells (growing)1013 204 of 4 7.32Up
Whole fly138 94 of 4

Looking for CG9302-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime