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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9305-RA through 18771 annotations produced 1 hits



(CG9305):

Annotation Number : CG9305
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032512
Gbrowse : chr2L:13371426-13373853 (-) // 100.0 //
Probeset : 1626680_at
Accessions : protein= NP_609643;, nucleotide= NM_135799;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0032512.
VDRC has 2 RNAi stocks for FBgn0032512 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 ± 44 of 4 0.80None
Head53 ± 74 of 4 0.80None
Eye78 ± 154 of 4 1.20None
Thoracicoabdominal ganglion56 ± 34 of 4 0.90None
Salivary gland31 ± 50 of 4 0.48Down
Crop53 ± 54 of 4 0.80None
Midgut42 ± 04 of 4 0.60Down
Tubule62 ± 24 of 4 1.00None
Hindgut63 ± 34 of 4 1.00None
Heart49 ± 14 of 4 0.75Down
Fat body63 ± 94 of 4 0.98None
Ovary111 ± 34 of 4 1.70Up
Testis127 ± 54 of 4 2.00Up
Male accessory glands47 ± 14 of 4 0.70Down
Virgin spermatheca61 ± 14 of 4 0.95None
Mated spermatheca73 ± 74 of 4 1.12None
Adult carcass50 ± 94 of 4 0.80None
Larval CNS112 ± 64 of 4 1.72Up
Larval Salivary gland43 ± 24 of 4 0.66Down
Larval midgut40 ± 44 of 4 0.61Down
Larval tubule22 ± 13 of 4 0.40Down
Larval hindgut63 ± 74 of 4 0.97None
Larval fat body36 ± 54 of 4 0.60Down
Larval trachea83 ± 34 of 4 1.28Up
Larval carcass65 ± 104 of 4 1.00None
S2 cells (growing)107 ± 34 of 4 1.65Up
Whole fly65 ± 34 of 4

Looking for CG9305-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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