FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9306-RA through 18771 annotations produced 1 hits

NADH ubiquinone oxidoreductase B22 (CG9306):

Annotation Number : CG9306
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032511
Gbrowse : chr2L:13370218-13371083 (-) // 100.0 //
Probeset : 1641171_at
Accessions : protein= NP_609642;, nucleotide= NM_135798;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred fr
Interpro : 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity
FlyMine data for FBgn0032511.
BDGP gene expression has embryonic in situ data for CG9306: 15 pix of staining in 12 body parts.
VDRC has 1 RNAi stocks for FBgn0032511 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1418 ± 44	4 of 4	1.30	Up
Head	1496 ± 26	4 of 4	1.30	Up
Eye	1570 ± 36	4 of 4	1.40	Up
Thoracicoabdominal ganglion	1784 ± 46	4 of 4	1.60	Up
Salivary gland	1942 ± 44	4 of 4	1.74	Up
Crop	1333 ± 72	4 of 4	1.20	None
Midgut	1362 ± 26	4 of 4	1.20	Up
Tubule	1195 ± 42	4 of 4	1.10	None
Hindgut	1932 ± 36	4 of 4	1.70	Up
Heart	1507 ± 52	4 of 4	1.35	Up
Fat body	1689 ± 195	4 of 4	1.51	Up
Ovary	707 ± 12	4 of 4	0.60	Down
Testis	790 ± 20	4 of 4	0.70	Down
Male accessory glands	1144 ± 17	4 of 4	1.00	None
Virgin spermatheca	1030 ± 33	4 of 4	0.92	None
Mated spermatheca	963 ± 44	4 of 4	0.86	Down
Adult carcass	2557 ± 148	4 of 4	2.30	Up
Larval CNS	726 ± 39	4 of 4	0.65	Down
Larval Salivary gland	1219 ± 51	4 of 4	1.09	None
Larval midgut	1102 ± 28	4 of 4	0.98	None
Larval tubule	1002 ± 72	4 of 4	0.90	None
Larval hindgut	1404 ± 49	4 of 4	1.25	Up
Larval fat body	779 ± 31	4 of 4	0.70	Down
Larval trachea	924 ± 54	4 of 4	0.83	Down
Larval carcass	1424 ± 130	4 of 4	1.27	None
S2 cells (growing)	704 ± 15	4 of 4	0.63	Down
Whole fly	1119 ± 24	4 of 4

Looking for CG9306-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720