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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9312-RA through 18771 annotations produced 1 hits


Annotation Number : CG9312
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038179
Gbrowse : chr3R:9591496-9592829 (+) // 100.0 //
Probeset : 1635294_at
Accessions : protein= NP_650313;, nucleotide= NM_142056;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038179.
BDGP gene expression has embryonic in situ data for CG9312: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0038179 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 10 of 4 0.20Down
Head399 314 of 4 7.30Up
Eye81 34 of 4 1.50Up
Thoracicoabdominal ganglion9 31 of 4 0.20Down
Salivary gland15 30 of 4 0.28Down
Crop32 34 of 4 0.60Down
Midgut13 10 of 4 0.30Down
Tubule722 394 of 413.30Up
Hindgut45 34 of 4 0.80None
Heart34 14 of 4 0.63None
Fat body37 140 of 4 0.70None
Ovary1 00 of 4 0.00Down
Testis3 10 of 4 0.10Down
Male accessory glands22 20 of 4 0.40Down
Virgin spermatheca12 10 of 4 0.22Down
Mated spermatheca19 40 of 4 0.36Down
Adult carcass373 144 of 4 6.90Up
Larval CNS11 21 of 4 0.21Down
Larval Salivary gland13 30 of 4 0.24Down
Larval midgut24 30 of 4 0.45Down
Larval tubule639 204 of 411.70Up
Larval hindgut88 74 of 4 1.63Up
Larval fat body2 10 of 4 0.00Down
Larval trachea89 164 of 4 1.64Up
Larval carcass607 684 of 411.16Up
S2 cells (growing)6 10 of 4 0.12Down
Whole fly54 64 of 4

Looking for CG9312-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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