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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9318-RA through 18771 annotations produced 1 hits



(CG9318):

Annotation Number : CG9318
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032880
Gbrowse : chr2L:20730644-20734310 (-) // 100.0 //
Probeset : 1636977_at
Accessions : protein= NP_610053;, nucleotide= NM_136209;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0032880.
BDGP gene expression has embryonic in situ data for CG9318: 25 pix of staining in 19 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain382 94 of 4 1.70Up
Head257 184 of 4 1.10None
Eye183 64 of 4 0.80Down
Thoracicoabdominal ganglion384 154 of 4 1.70Up
Salivary gland1587 794 of 4 6.89Up
Crop319 144 of 4 1.40Up
Midgut381 84 of 4 1.70Up
Tubule178 64 of 4 0.80Down
Hindgut340 94 of 4 1.50Up
Heart300 94 of 4 1.30Up
Fat body235 174 of 4 1.02None
Ovary239 64 of 4 1.00None
Testis248 74 of 4 1.10None
Male accessory glands1076 474 of 4 4.70Up
Virgin spermatheca122 34 of 4 0.53Down
Mated spermatheca142 24 of 4 0.62Down
Adult carcass245 54 of 4 1.10None
Larval CNS301 34 of 4 1.31Up
Larval Salivary gland1708 1254 of 4 7.41Up
Larval midgut353 74 of 4 1.53Up
Larval tubule379 104 of 4 1.60Up
Larval hindgut377 74 of 4 1.64Up
Larval fat body359 364 of 4 1.60Up
Larval trachea353 384 of 4 1.53Up
Larval carcass349 134 of 4 1.52Up
S2 cells (growing)900 164 of 4 3.91Up
Whole fly230 74 of 4

Looking for CG9318-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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