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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9343-RB through 18771 annotations produced 1 hits



/// GAGA factor (CG42507 /// Trl):

Annotation Number : CG9343
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013263 /// FBgn0260233
Gbrowse : chr3L:14741028-14750430 (-) // 100.0 //
Probeset : 1628275_at
Accessions : protein= NP_001034013; /// NP_001034014; /// NP_001034015; /// NP_001163443; /// NP_001163444; /// NP_996077; /// NP_996078; /// NP_996079; /// NP_996080; /// NP_996081; /// NP_996082;, nucleotide= NM_001038924; /// NM_001038925; /// NM_001038926; /// NM_001169972; /// NM_001169973; /// NM_206355; /// NM_206356; /// NM_206357; /// NM_206358; /// NM_206359; /// NM_206360;
Pathway : via endonucleolytic cleavage and ligation // inferred from electronic annotation /// 0007049 // cell cycle // inferred
Interpro : DNA-dependent // traceable author statement /// 0045893 // positive regulation of transcription
FlyMine data for FBgn0013263 /// FBgn0260233.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain737 84 of 420.50Up
Head158 154 of 4 4.40Up
Eye118 134 of 4 3.29Up
Thoracicoabdominal ganglion487 284 of 413.60Up
Salivary gland23 22 of 4 0.64Down
Crop12 14 of 4 0.40Down
Midgut20 14 of 4 0.60Down
Tubule33 54 of 4 0.90None
Hindgut13 04 of 4 0.40Down
Heart4 10 of 4 0.14Down
Fat body9 12 of 4 0.26Down
Ovary23 04 of 4 0.60Down
Testis5 12 of 4 0.20Down
Male accessory glands12 12 of 4 0.30Down
Virgin spermatheca8 11 of 4 0.23Down
Mated spermatheca8 11 of 4 0.22Down
Adult carcass16 13 of 4 0.50Down
Larval CNS930 1954 of 425.93Up
Larval Salivary gland24 34 of 4 0.67Down
Larval midgut5 01 of 4 0.16Down
Larval tubule4 11 of 4 0.10Down
Larval hindgut8 02 of 4 0.25Down
Larval fat body19 14 of 4 0.50Down
Larval trachea16 64 of 4 0.45Down
Larval carcass36 54 of 4 1.03None
S2 cells (growing)17 14 of 4 0.50Down
Whole fly35 34 of 4

Looking for CG9343-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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